ChickGCE - Chicken Germ Cell EST Database


Blast search (BLAST)
Search By Keywords (SearchKW)
Search By Clone ID (SearchID)
Gene Ontology
Putative Novel Transcripts (PuNT)
Significance of Gene Expression Profiles (SoGEP)
Putative Novel Alternative Splicing variants (PuNAS)

Putative New Transcripts
Putative New Transcripts
Search Putative New Transcripts
Functional Annotation:    
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Putative New Transcript

Four tissue data sets related to germ cells were subjected to the Gene Ontology (GO) database for annotation and categorization. GO annotation and identification were executed with a sequence similarity search against the tentative consensus (TC) sequences of the GgGI release 10.0 (28 January 2005) using BLASTN. GO categorization used the GO flat files of the Gene Ontology Consortium. Cutoff values were 95% identity, 60% coverage, and an e-value < 0.00001 for GO identification. If a query sequence did not satisfy the above conditions, it was placed in the putative transcript group with the BLAST no-hit sequences. For GO annotation of the transcripts, we performed a BLASTX search against the nonredundant NCBI protein database.

SEE the method of identifying putative transcripts

Download gzipped file of new transcript for Gonad
Download gzipped file of new transcript for PGC

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